rxnutils.data.ord package¶
Submodules¶
rxnutils.data.ord.import_ord_dataset module¶
Module containing script to import ORD dataset to a CSV file
- rxnutils.data.ord.import_ord_dataset.main(input_args=None)¶
Function for command-line tool
- Parameters:
input_args (Sequence[str] | None)
- Return type:
None
rxnutils.data.ord.preparation_pipeline module¶
Module containing pipeline for extracting, transforming and cleaning Open reaction database data This needs to be run in an environment with rxnutils installed
- class rxnutils.data.ord.preparation_pipeline.OrdDataPreparationFlow(use_cli=True)¶
Bases:
DataPreparationBaseFlow
Pipeline for extracting ORD data and do some clean-up
- ord_data = metaflow.Parameter(name=ord-data, kwargs={})¶
- data_prefix = 'ord'¶
- start()¶
Import ORD data
- setup_cleaning()¶
Setup cleaning
- do_cleaning()¶
Perform cleaning of data
- join_cleaning(_)¶
Combined cleaned batches of data
- end()¶
Final step, just print information